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LuxRep: a technical replicate-aware method for
bisulfite
sequencing
data analysis
Referentgranskad
Öppen tillgång
DOI
10.1186/s12859-021-04546-1
Malonzo, Maia H.; Halla-aho, Viivi; Konki, Mikko; Lund, Riikka J.; Lähdesmäki, Harri
Bmc bioinformatics
2022
Targeted
bisulfite
sequencing
of Scots pine adaptation-related genes
Referentgranskad
Öppen tillgång
DOI
10.1016/j.plantsci.2024.112173
Alakärppä, Emmi; Salo, Heikki M; Suokas, Marko; Jokipii-Lukkari, Soile; Vuosku, Jaana; Häggman, Hely
Plant science
2024
High-resolution targeted
bisulfite
sequencing
reveals blood cell type-specific DNA methylation patterns in IL13 and ORMDL3
Referentgranskad
Öppen tillgång
DOI
10.1186/s13148-021-01093-7
Soderhall, C; Reinius, LE; Salmenpera, P; Gentile, M; Acevedo, N; Konradsen, JR; Nordlund, B; Hedlin...
Clinical epigenetics
2021
Temporally replicated DNA methylation patterns in great tit using reduced representation
bisulfite
sequencing
Referentgranskad
Öppen tillgång
DOI
10.1038/s41597-019-0136-0
Mäkinen, Hannu; Viitaniemi, Heidi M.; Visser, Marcel E.; Verhagen, Irene; van Oers, Kees; Husby, Ari...
Scientific data
2019
Probabilistic modeling of DNA methylation
sequencing
data
Öppen tillgång
Halla-aho, Viivi
Aalto University
2022
Permutation-based significance analysis reduces the type 1 error rate in
bisulfite
sequencing
data analysis of human umbilical cord blood samples
Referentgranskad
Öppen tillgång
DOI
10.1080/15592294.2022.2044127
Laajala, Essi; Halla-aho, Viivi; Grönroos, Toni; Kalim, Ubaid Ullah; Vähä-Mäkilä, Mari; Nurmio, Mirj...
Epigenetics
2022
Laser capture microdissection-reduced representation
bisulfite
sequencing
(LCM-RRBS) maps changes in DNA methylation associated with gonadectomy-induced adrenocortical neoplasia in the mouse
Referentgranskad
Öppen tillgång
DOI
10.1093/nar/gkt230
Schillebeeckx, Maximiliaan; Schrade, Anja; Loebs, Ann-Kathrin; Pihlajoki, Marjut; Wilson, David B.; ...
Nucleic acids research
2013
Long-Read
Sequencing
Emerging in Medical Genetics
Referentgranskad
Öppen tillgång
DOI
10.3389/fgene.2019.00426
Mantere, Tuomo; Kersten, Simone; Hoischen, Alexander
Frontiers in genetics
2019
Familial long-read
sequencing
increases yield of de novo mutations
Referentgranskad
DOI
10.1016/j.ajhg.2022.02.014
Noyes, Michelle D.; Harvey, William T.; Porubsky, David; Sulovari, Arvis; Li, Ruiyang; Rose, Nichola...
American journal of human genetics
2022
A computational framework for DNA
sequencing
microscopy
Referentgranskad
Öppen tillgång
DOI
10.1073/pnas.1821178116
Hoffecker, Ian T.; Yang, Yunshi; Bernardinelli, Giulio; Orponen, Pekka; Högberg, Björn
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2019
LuxRep: a technical replicate-aware method for
bisulfite
sequencing
data analysis
Referentgranskad
Öppen tillgång
DOI
10.1186/s12859-021-04546-1
2022
Targeted
bisulfite
sequencing
of Scots pine adaptation-related genes
Referentgranskad
Öppen tillgång
DOI
10.1016/j.plantsci.2024.112173
2024
High-resolution targeted
bisulfite
sequencing
reveals blood cell type-specific DNA methylation patterns in IL13 and ORMDL3
Referentgranskad
Öppen tillgång
DOI
10.1186/s13148-021-01093-7
2021
Temporally replicated DNA methylation patterns in great tit using reduced representation
bisulfite
sequencing
Referentgranskad
Öppen tillgång
DOI
10.1038/s41597-019-0136-0
2019
Probabilistic modeling of DNA methylation
sequencing
data
Öppen tillgång
2022
Permutation-based significance analysis reduces the type 1 error rate in
bisulfite
sequencing
data analysis of human umbilical cord blood samples
Referentgranskad
Öppen tillgång
DOI
10.1080/15592294.2022.2044127
2022
Laser capture microdissection-reduced representation
bisulfite
sequencing
(LCM-RRBS) maps changes in DNA methylation associated with gonadectomy-induced adrenocortical neoplasia in the mouse
Referentgranskad
Öppen tillgång
DOI
10.1093/nar/gkt230
2013
Long-Read
Sequencing
Emerging in Medical Genetics
Referentgranskad
Öppen tillgång
DOI
10.3389/fgene.2019.00426
2019
Familial long-read
sequencing
increases yield of de novo mutations
Referentgranskad
DOI
10.1016/j.ajhg.2022.02.014
2022
A computational framework for DNA
sequencing
microscopy
Referentgranskad
Öppen tillgång
DOI
10.1073/pnas.1821178116
2019
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